I am thinking that a good model to start working from is the CElegansNeuroML project. For right now I'm going to browse around to figure out how it all fits together. One of the problems I have is that my NeuroConstruct build can't open the 3D display. I'm using Xephyr in XMonad so I can get a non-tiling WM in here (Java AWT programs don't play well with Xmonad it seems). Mayhaps I can use it in a different session.
For right now, I'm going to explore some more data sources, start looking at where there are shared entities. Regardless of what we end up doing, we'll need to handle this somehow.
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